Face-cluster

Software

Software

  • Scilab 5.4-1
    • add in PATH /usr/local/scilab/bin
  • Idl 8.2
    • add source /usr/local/itt/idl/bin/idl_setup (for C shell)
    • add ./usr/local/itt/idl/bin/idl_setup.ksh (for korn shell)
    • add ./usr/local/itt/idl/bin/idl_setup.bash (for bash shell)
  • VisIt 2.5.1 (Visualization Software)
    • add setenv LIBGL_ALWAYS_INDIRECT y
    • add in PATH /usr/local/visit/bin
  • Paraview 3.14 (Visualization Software)
    • add setenv LIBGL_ALWAYS_INDIRECT y
    • add in PATH /usr/local/paraview/bin
  • Python 2.6.6 with Ipython 0.12, numpy 1.3.0, matplotlib 0.99.1.1, h5py
  • Octave 3.4.2: add /usr/lib64/mpich2/lib/ in your LD_LIBRARY_PATH
  • Matlab R2012a: see how to submit a matlab job on the job submission page : /usr/local/MATLAB/R2012a/bin/matlab
  • ImageMagick 6.5.4-7
  • IRODS 3.1: https://www.irods.org/index.php/Main_Page
    • add in PATH /usr/local/irods3.1_LinuxSL6/bin

Intel Composer XE 2013

  • ifort v14.0.2, icc/icpc v14.0.2, idb v13, mkl
    • add 'source /usr/local/intel/bin/compilervars.[c]sh intel64'

https://software.intel.com/en-us/intel-composer-xe/

Compiler

  • Gnu Gcc/Gfortran 4.4.4
  • Intel Compiler 10.1.026
    • ifort : add 'source /usr/local/intel/fce/10.1.026/bin/ifortvars.[c]sh' in your script shell
    • icc/icpc : add 'source /usr/local/intel/cce/10.1.026/bin/iccvars.[c]sh' in your script shell
  • Cython 0.14

Debuggers

  • Intel idbe 10.1.026 : add 'source /usr/local/intel/idbe/10.1.026/bin/idbvar.[c]sh' in your script shell
  • gdb 7.2 : Gdb website
  • valgrind 3.5 : Valgrind website

Libraries

  • Gnu Scientific Library 1.13 : Gsl website
  • Intel Math Kernel Library 10.3.9 (contains BLAS, LAPACK, ScaLAPACK1, sparse solvers, fast Fourier transforms, vector math...) : Intel Math Documentation
    • add 'source /usr/local/intel/mkl/10.3.9/bin/compilervars.[c]sh intel64' (lib 64bits) in your script shell or
    • 'source /usr/local/intel/mkl/10.3.9/bin/compilervars.[c]sh ia32' (lib 32bits)
    • To compile and link with Intel Fortran, GNU Fortran, GNU C/C++, see http://software.intel.com/sites/products/mkl/
  • Openmpi-1.4.5 mpicc/mpic++ built with Gnu Gcc-4.4.4 & mpif77/mpif90 built by Intel fort 10.1 : Openmpi Documentation
    • add in PATH /usr/local/openmpi/bin
    • add in LD_LIBRARY_PATH /usr/local/openmpi/lib:/usr/local/openmpi/lib/openmpi
  • FFTW3 3.2.2
  • atlas 3.8.3
  • lapack 3.2.1
  • hdf5 1.8.5