Face-cluster
Software
Software
- Scilab 5.4-1
- add in PATH /usr/local/scilab/bin
- Idl 8.2
- add source /usr/local/itt/idl/bin/idl_setup (for C shell)
- add ./usr/local/itt/idl/bin/idl_setup.ksh (for korn shell)
- add ./usr/local/itt/idl/bin/idl_setup.bash (for bash shell)
- VisIt 2.5.1 (Visualization Software)
- add setenv LIBGL_ALWAYS_INDIRECT y
- add in PATH /usr/local/visit/bin
- Paraview 3.14 (Visualization Software)
- add setenv LIBGL_ALWAYS_INDIRECT y
- add in PATH /usr/local/paraview/bin
- Python 2.6.6 with Ipython 0.12, numpy 1.3.0, matplotlib 0.99.1.1, h5py
- Octave 3.4.2: add
/usr/lib64/mpich2/lib/
in your LD_LIBRARY_PATH - Matlab R2012a: see how to submit a matlab job on the job submission page :
/usr/local/MATLAB/R2012a/bin/matlab
- ImageMagick 6.5.4-7
- IRODS 3.1: https://www.irods.org/index.php/Main_Page
- add in PATH /usr/local/irods3.1_LinuxSL6/bin
Intel Composer XE 2013
- ifort v14.0.2, icc/icpc v14.0.2, idb v13, mkl
- add 'source /usr/local/intel/bin/compilervars.[c]sh intel64'
https://software.intel.com/en-us/intel-composer-xe/
Compiler
- Gnu Gcc/Gfortran 4.4.4
- Intel Compiler 10.1.026
- ifort : add 'source /usr/local/intel/fce/10.1.026/bin/ifortvars.[c]sh' in your script shell
icc/icpc : add 'source /usr/local/intel/cce/10.1.026/bin/iccvars.[c]sh' in your script shell
- Cython 0.14
Debuggers
Intel idbe 10.1.026 : add 'source /usr/local/intel/idbe/10.1.026/bin/idbvar.[c]sh' in your script shell- gdb 7.2 : Gdb website
- valgrind 3.5 : Valgrind website
Libraries
- Gnu Scientific Library 1.13 : Gsl website
- Intel Math Kernel Library 10.3.9 (contains BLAS, LAPACK, ScaLAPACK1, sparse solvers, fast Fourier transforms, vector math...) : Intel Math Documentation
- add 'source /usr/local/intel/mkl/10.3.9/bin/compilervars.[c]sh intel64' (lib 64bits) in your script shell or
- 'source /usr/local/intel/mkl/10.3.9/bin/compilervars.[c]sh ia32' (lib 32bits)
- To compile and link with Intel Fortran, GNU Fortran, GNU C/C++, see http://software.intel.com/sites/products/mkl/
- Openmpi-1.4.5 mpicc/mpic++ built with Gnu Gcc-4.4.4 & mpif77/mpif90 built by Intel fort 10.1 : Openmpi Documentation
- add in PATH /usr/local/openmpi/bin
- add in LD_LIBRARY_PATH /usr/local/openmpi/lib:/usr/local/openmpi/lib/openmpi
- FFTW3 3.2.2
- atlas 3.8.3
- lapack 3.2.1
- hdf5 1.8.5