Apc-cluster

Software

Software

  • Visit 2.10.1 (Visualization Software)
    • add setenv LIBGL_ALWAYS_INDIRECT y
    • add in PATH /usr/local/visit/bin
  • Idl 8.2
    • add source /usr/local/itt/idl/bin/idl_setup (for C shell)
    • add ./usr/local/itt/idl/bin/idl_setup.ksh (for korn shell)
    • add ./usr/local/itt/idl/bin/idl_setup.bash (for bash shell)
  • Python 2.7.5 (python2)
    • ipython 4.1.1
    • matplotlib 1.5.1
    • numpy 1.10.4
    • scipy 0.17.0
    • pyfits 3.4
    • cython 0.19
    • h5py 2.5.0
  • Python 3.4.5 (python3)
  • Python 3.6 (python36)
  • Matlab R2015a for Lisa project (limited to 4 user) : /usr/local/MATLAB/R2015a/bin/matlab
  • Matlab R2015a with IN2P3 licence : /usr/local/MATLAB_CC/R2015a/bin/matlab
  • For cmake 3 use commande cmake3 instead of cmake

Singularity

  • Singularity v3.2 (singularity)
  • Singularity v2.6 (/soft/singularity/bin/singularity)

Intel Composer XE 2015

  • Mkl 11.2 (Blas-1-2-3, Lapack1-2-3, fftw, Sparse solver, etc...)

https://software.intel.com/en-us/articles/intel-mkl-112-release-notes

  • Integrate Performance Primitive 8.2

https://software.intel.com/en-us/articles/intel-ipp-82-library-release-notes

  • Threading Building Block 4.3

https://www.threadingbuildingblocks.org/documentation

Compiler

  • Intel Compiler 15.0.1 : ifort, icc, icpc
    • add source /usr/local/intel/bin/compilervars.[c].sh intel64 (or ia32)

Debuggers

  • gdb 7.6
  • gdb-ia 7.7 (Intel)
  • root 6.10
  • root 5.99 (source /soft/root/root5/bin/thisroot.sh)

MPI

  • openmpi 1.10.2 mpicc/mpic++ built with Gnu Gcc-4.8.5 & mpif77/mpif90 built by Intel fort 15.0.1
    • add in PATH /usr/local/openmpi/bin
    • add in LD_LIBRARY_PATH /usr/local/openmpi/lib:/usr/local/openmpi/lib/openmpi

https://www.open-mpi.org/doc/v1.10/

  • openmpi 1.10.4 mpicc/mpic++ built with Gnu Gcc-4.8.5
    • export PATH=/soft/openmpi/openmpi-1.10.4/bin:$PATH
    • export LD_LIBRARY_PATH=/soft/openmpi/openmpi-1.10.4/lib/:/soft/openmpi/openmpi-1.10.4/lib/openmpi/:$LD_LIBRARY_PATH
  • openmpi 2.0.1 built with Gnu Gcc-4.8.5
    • add in PATH /soft/openmpi/openmpi-2.0.1/bin
    • add in LD_LIBRARY_PATH=/soft/openmpi/openmpi-2.0.1/lib/:/soft/openmpi/openmpi-2.0.1/lib/openmpi/

https://www.open-mpi.org/doc/v2.0/

  • openmpi 3 mpicc/mpic++ built with Gnu Gcc-6.4.0
    • export PATH=/soft/openmpi/openmpi-3.0.0/bin:$PATH
    • export LD_LIBRARY_PATH=/soft/openmpi/openmpi-3.0.0/lib/:/soft/openmpi/openmpi-3.0.0/lib/openmpi/:$LD_LIBRARY_PATH

https://www.open-mpi.org/doc/current/

Other libraries

  • gsl 1.15
  • fftw 3.3.3
  • atlas 3.10.1
  • lapack 3.4.2
  • hdf5 1.8.12
  • boost 1.61 (http://www.boost.org/)
    • Disponible dans /soft/boost/boost161/
    • pour charger l'environnement taper :

source /soft/boost/boost161/boost_env.sh

  • boost 1.64 (compilé avec gcc 6.4 et openmpi 3)
    • Disponible dans /soft/boost/boost164/
  • MultiNest v 3.10 (export LD_LIBRARY_PATH=/soft/MultiNest/lib/:$LD_LIBRARY_PATH)
  • MultiNest v 3.10 avec MPI 1.10.4 (export LD_LIBRARY_PATH=/soft/MultiNestMPI1/lib/:$LD_LIBRARY_PATH)
  • PyMultiNest
  • Gcc & Gfortran 5.4.0 (/soft/gcc)
  • CFITSIO & CFITSIO-devel 3.370 : https://heasarc.gsfc.nasa.gov/docs/software/fitsio/fitsio.html
  • CCFits 2.5 (/soft/ccfits) : export LD_LIBRARY_PATH=/soft/ccfits/lib/