PhantomConfiguration Class Reference

#include <PhantomConfiguration.hh>

Public Member Functions
	PhantomConfiguration ()
	~PhantomConfiguration ()
G4int	Initialize ()
G4int	GetPhantomTotalPixels ()
G4int	GetNucleusTotalPixels ()
G4int	GetCytoplasmTotalPixels ()
G4float	GetPixelSizeX ()
G4float	GetPixelSizeY ()
G4float	GetPixelSizeZ ()
G4float	GetCytoplasmMass ()
G4float	GetNucleusMass ()
G4ThreeVector	GetVoxelThreeVector (G4int i)

Detailed Description

Definition at line 40 of file PhantomConfiguration.hh.

Constructor & Destructor Documentation

PhantomConfiguration::PhantomConfiguration

(

)

Definition at line 49 of file PhantomConfiguration.cc.

References Initialize().

{
  Initialize();
}

PhantomConfiguration::~PhantomConfiguration

(

)

Definition at line 54 of file PhantomConfiguration.cc.

{
  delete[] fVoxelThreeVector;
}

Member Function Documentation

G4float PhantomConfiguration::GetCytoplasmMass ( )

inline

Definition at line 54 of file PhantomConfiguration.hh.

{return fCytoplasmMass;}  

G4int PhantomConfiguration::GetCytoplasmTotalPixels ( )

inline

Definition at line 50 of file PhantomConfiguration.hh.

{return fCytoplasmTotalPixels;}  

G4float PhantomConfiguration::GetNucleusMass ( )

inline

Definition at line 55 of file PhantomConfiguration.hh.

{return fNucleusMass;}  

G4int PhantomConfiguration::GetNucleusTotalPixels ( )

inline

Definition at line 49 of file PhantomConfiguration.hh.

{return fNucleusTotalPixels;}  

G4int PhantomConfiguration::GetPhantomTotalPixels ( )

inline

Definition at line 48 of file PhantomConfiguration.hh.

{return fPhantomTotalPixels;}  

G4float PhantomConfiguration::GetPixelSizeX ( )

inline

Definition at line 51 of file PhantomConfiguration.hh.

{return fDx;}  

G4float PhantomConfiguration::GetPixelSizeY ( )

inline

Definition at line 52 of file PhantomConfiguration.hh.

{return fDy;}  

G4float PhantomConfiguration::GetPixelSizeZ ( )

inline

Definition at line 53 of file PhantomConfiguration.hh.

{return fDz;}  

G4ThreeVector PhantomConfiguration::GetVoxelThreeVector ( G4int  i )

inline

Definition at line 57 of file PhantomConfiguration.hh.

{return fVoxelThreeVector[i];}

G4int PhantomConfiguration::Initialize

(

)

Definition at line 61 of file PhantomConfiguration.cc.

References python.hepunit::cm3, density, g(), python.hepunit::micrometer, and test::v.

Referenced by PhantomConfiguration().

{
  G4float vx, vy, vz, tmp, density;
  G4int den, mat;
  G4float denCyto1, denCyto2, denCyto3, denNucl1, denNucl2, denNucl3;
  
  FILE* fMap;
  
  density=0;

  fPhantomTotalPixels=0;
  fNucleusTotalPixels=0;
  fCytoplasmTotalPixels=0;
  fDx=0;
  fDy=0;
  fDz=0;
  fNucleusMass=0;
  fCytoplasmMass=0;
  
  // READ PHANTOM PARAMETERS
  fMap = fopen("phantom.dat","r");

  fscanf(fMap,"%i %i %i",&fPhantomTotalPixels, &fNucleusTotalPixels, &fCytoplasmTotalPixels);
  fscanf(fMap,"%f %f %f",&fDx, &fDy, &fDz);
  fscanf(fMap,"%f %f %f",&tmp, &tmp, &tmp);
  fscanf(fMap,"%f %f %f",&denCyto1, &denCyto2, &denCyto3);
  fscanf(fMap,"%f %f %f",&denNucl1, &denNucl2, &denNucl3);
  fDx = fDx * micrometer;
  fDy = fDy * micrometer;
  fDz = fDz * micrometer;
  
  fVoxelThreeVector = new G4ThreeVector [fPhantomTotalPixels];

  for (G4int i=0; i<fPhantomTotalPixels; i++) 
  { 
   fscanf(fMap,"%f %f %f %i %i %f",&vx, &vy, &vz, &mat, &den, &tmp);

    if (std::abs(mat-2)<1.e-30) // NUCLEUS
        {
      if (std::abs(den-1)<1.e-30) density = denNucl1*(g/cm3);
      if (std::abs(den-2)<1.e-30) density = denNucl2*(g/cm3);
      if (std::abs(den-3)<1.e-30) density = denNucl3*(g/cm3);
      fNucleusMass   = fNucleusMass   + density * fDx * fDy * fDz ;
        }

    if (std::abs(mat-1)<1.e-30) // CYTOPLASM
        { 
      if (std::abs(den-1)<1e-30) density = denCyto1*(g/cm3);
      if (std::abs(den-2)<1e-30) density = denCyto2*(g/cm3);
      if (std::abs(den-3)<1e-30) density = denCyto3*(g/cm3);
      fCytoplasmMass = fCytoplasmMass + density * fDx * fDy * fDz ;
    }
    
    G4ThreeVector v(vx,vy,vz);
    fVoxelThreeVector[i] = v;
  }

  fclose(fMap);

  return 0;
}

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The documentation for this class was generated from the following files:

• PhantomConfiguration.hh
• PhantomConfiguration.cc